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Home » Blog » What’s Really Happening Inside Your Kidneys

What’s Really Happening Inside Your Kidneys

Jill Harris, LPN, CHC Avatar

Written by

Jill Harris, LPN, CHC

Updated

January 23, 2026

Why Understanding Your Kidneys Changes Behavior

I’ve always believed that people are more willing to change when they understand why they’re being asked to change. Diet advice sticks when it’s tied to what’s actually happening inside the body, not just a list of rules. This approach is what has helped my patients succeed with lifestyle change.

For many people, a kidney stone is a wake-up call. That painful moment creates attention—and attention is where learning happens. It’s like opening the dishwasher and seeing cloudy glasses and grit at the bottom. Nothing broke, but something clearly wasn’t working the way it should.

What Your Kidneys Are Doing All Day—and Why Stones Form

Before we talk about kidneys, think about a dishwasher you never turn off.

All day long, your kidneys run cycle after cycle in the background. Every sip you take and every bite you eat gets loaded into the dishwasher. Their job is to rinse away waste, decide what your body keeps, and send the rest out—quietly and constantly, without you ever noticing.

Like a dishwasher, kidneys work best when there’s enough water and the load is reasonable. When there isn’t enough water, things don’t rinse clean. When too much “stuff” comes through—salt, oxalate, sugar, excess protein—residue gets left behind. The dishwasher still runs, but it doesn’t clean as well as it used to.

Kidney stones don’t mean the dishwasher is broken. They’re what happens when the system gets overloaded too often, and not enough water is moving through. Grit builds up. Residue hardens. Over time, that buildup turns into stones. This is why increasing fluids is so important for kidney stone formers.

A Look at What Your Kidneys Are Actually Doing

Your kidneys sit quietly in your lower back, but they are busy all day long. Blood leaves the heart and travels to the kidneys to be filtered (via the renal arteries), carrying water, waste products, and minerals. After the kidney does its work, the blood flows back out cleaner and more balanced and returns to the heart and the rest of the body (via the renal vein).

The outer part of the kidney (the cortex) is where most filtration begins. Deeper inside, urine becomes thicker and more concentrated. This inner area (the medulla) is where stone risk is highest, especially when fluid intake is low or salt intake is high.

Think back to the dishwasher. Less water means residue gets left behind. In the kidney, less water means urine becomes thick. Thick urine allows minerals to stick together instead of being rinsed away. That’s the beginning of stone formation—and why hydration is always goal number one of the Kidney Stone Diet®.

Where the Kidney Decides What Stays and What Goes

Blood first enters a tiny filter in the kidney (glomerulus), where water and small particles leave the blood and move into the kidney’s tubes. As that fluid travels along (Bowman’s capsule and tubules), the kidney decides what to keep and what to send out as urine.

Think of this as the main rinse cycle in the dishwasher. Everything comes through together, and the kidney decides what gets washed away and what gets saved.

One stretch of this pathway matters more than any other for stone formers (the proximal tubule). This is where the kidney does its “saving.” As fluid moves through the kidney, it pulls useful substances—like water and calcium—back into the bloodstream instead of letting them leave in the urine.

When salt intake is high, that saving process doesn’t work as well. Salt forces more fluid to keep moving forward, and calcium gets swept along with it. Instead of being saved for the blood, calcium is lost in the urine.

That calcium should have stayed in the bloodstream to do important jobs. Instead, it sits in concentrated urine, where it has time to settle, stick to other minerals, and slowly harden. This is one of the main ways calcium stones form.

Why Low Fluid Makes Everything Worse

Another part of the nephron controls how concentrated urine becomes (loop of Henle). When fluid intake is low, the kidney switches into water-saving mode.

In dishwasher terms, this is a low-water cycle with a full load. The system still runs, but residue continues to build up. In the kidney, darker, thicker urine gives minerals more chances to stick together and form crystals.

The final stretch of the kidney makes last-minute adjustments before urine leaves (the distal tubule and collecting duct). This is where the kidney controls how acidic the urine is and how much calcium and other stone-forming substances remain dissolved rather than stick together.

When urine is too acidic or too concentrated, minerals are more likely to clump and form crystals. By the time urine leaves the kidney, those conditions are already set, so the risk of kidney stones is already determined.

No one makes a stone in a day. But every day, your nephrons respond to the conditions you create.

How Stones Cause Pain — and Why Prevention Comes First

Once urine is formed, it collects inside the kidney (renal pelvis) and then travels down a narrow tube to the bladder (ureter). If a stone forms and tries to move through that tight space, pain happens.

The pain doesn’t come from the stone forming. It comes from the stone moving—like scraping hardened residue through a narrow pipe.

That’s why stones feel sudden but aren’t. The buildup happens quietly over time. The pain shows up later.

Prevention happens long before that.

Why the Kidney Stone Diet® Goals Matter to Your Kidneys

When I talk about hydration, sodium, calcium, sugar, protein, and oxalate, I’m not listing random food rules. Each one affects how hard your kidneys have to work and what builds up inside them over time.

Fluids

When you don’t drink enough, your kidneys try to save every drop of water. Urine gets darker and thicker, like running a dishwasher on a low-water cycle. Minerals don’t rinse away and start sticking together.

Sodium

When sodium intake is high, the kidneys have a harder time holding on to calcium. Normally, calcium passes through the kidneys during filtration and is then returned to the body for important jobs like keeping your heart beating, your muscles moving, and your nerves working.

Salt and calcium travel together in the kidney. When more salt is excreted in the urine, calcium is dragged along. Even if you’re not eating much calcium, more ends up in the urine where it doesn’t belong.

That extra calcium usually isn’t coming from food. It’s calcium your body already has circulating in the blood and stored in bones.  Over time, that calcium sitting in the urine sticks to other particles and slowly hardens into stones.

This is also why so many stone formers are later found to have bone loss. When calcium keeps leaking into the urine, the body often pulls more from bones to keep blood levels stable.

Lowering sodium protects your kidneys. Cutting calcium does not. In fact, eating too little calcium can make things worse.

Salt doesn’t create calcium—it causes you to lose the calcium your body is trying to protect.

Calcium

When calcium intake is too low, or calcium is not consumed with meals, oxalate is absorbed rather than blocked in the gut. The kidney then has to deal with it. In thick urine, calcium and oxalate easily find each other. Eating enough calcium lowers stone risk and supports bone health.

Added Sugar

High sugar intake increases calcium loss in urine and adds extra waste to every wash cycle. The kidney still works, but it has to work harder.

Meat Protein

High meat intake (anything that runs, swims, or flies is classified as meat) makes urine more acidic, increases calcium loss, and lowers citrate. Acidic urine makes some stones easier to form and harder to dissolve.

Oxalate

When oxalate intake is high, and there is insufficient fluid or calcium to buffer it, excess crystals can settle in the kidneys. The system becomes overwhelmed. Many of you ate high-oxalate foods (almonds, almond milk, almond flour, and of course, spinach) in generous amounts every single day, along with getting no calcium needs met. And months later, out came a kidney stone.

None of this happens overnight. But the kidney remembers patterns. What you repeat becomes the conditions it has to work in.

The Takeaway

My job is to teach you how to think—not just how to eat. I want you to understand why your choices matter, what’s happening inside your body, and how what you do now shapes your kidney health over time. When you understand the system, you get to decide what’s worth it and what isn’t.

Taking care of your kidneys isn’t about one perfect day. It’s about being responsible with the choices you repeat—and understanding why those choices matter.

Your friend, 
Nurse Jill

P.S. For my fellow science nerds, here is a video that explains what your amazing kidneys do and how hard they work to keep you healthy. 

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Jill Harris, LPN, CHC Avatar

About the Author

Jill Harris is a Licensed Practical Nurse (LPN) who specializes in kidney stone prevention. Her goal is to teach you what you need to know and, more importantly, how to put that knowledge to work so you can stop forming stones. For good.
  1. Joseph Vesce Avatar
    Joseph Vesce
    January 24, 2026

    Another amazing article! Thank you!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Joe!
      Glad you liked it!
      j

      Reply
  2. Karessa Huber Avatar
    Karessa Huber
    January 24, 2026

    Great article!!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Karessa,
      Glad it helped bring more clarity. This stuff can be very complicated!
      Nurse Jill

      Reply
  3. Mugammad M. Chaudry Avatar
    Mugammad M. Chaudry
    January 24, 2026

    Dear Nurse Jill,
    I enjoyed reading the recent article,
    What Your Kidneys Are Doing All Day—and Why Stones Form?
    Thank you for creating the KIDNEY STONE DIET , an interventional health education program.
    It is so simple, awesome and easy as an apple pie recipe. You analogy of kidneys with dishwasher was genius. .
    I don’t have kidney stones, and I would not wish myself or anyone else to have them either. With kind regards,
    Muhammad MC

    Reply
  4. Jennifer Mansfield Avatar
    Jennifer Mansfield
    January 24, 2026

    Great analogy – I wish I had this when I used to teach the urinary system. I love the quick reminder of the whys (and they are good responses when people ask things like “why are you concerned about sugar?”. Thank you.

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Jennifer,
      I am glad this analogy resonated with you. The kidneys are terrible complicated organs so to understand them can be very overwhelming. I don’t think patients need to go too deep, but an overview of what they do and how they work can help keep us invested in taking care of them.
      Nurse Jill

      Reply
  5. Cindy Prince Avatar
    Cindy Prince
    January 24, 2026

    Thank you!! Excellent information. I appreciate it so much. I always need review.

    As a retired nurse and yes, science nerd. I watched the video. I’m always interested in those things.
    Funny note, I found an error.

    At 3: 18, the narrator talks about exit to the *uterus* when he meant *ureters*. It’s fast, and at first I thought I heard him wrong but I’ve listened to it three or four times, lol
    If you’re interested in and have a mind, see what you think. 😏😎

    Reply
  6. jeffrey Charles anderson Avatar
    jeffrey Charles anderson
    January 24, 2026

    I love this explanation, when I was in the Navy I operated Propulsion Boilers , which have a very high heat transfer rate in a small compact container with heat exchangers. Being responsible for the Boiler Chemistry was a daunting challenge, the boiler water, even though fairly pure cycles up over time to dangerous levels and beigin to shed calcium and magnesium which build up on the heat transfer surfaces. When ever a boiler was taken off line we would do a seris of bottom blows to reduce these concentrations as much as possible, I think of urine cycleing up in my bladder and see the value of enough water and full evacuation of the bladder when I urinate.
    Thank You

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Jeffrey,
      Wow, tough job you had in the Navy! I am glad you could relate to the article. Thank you for trusting me to help in any small way I can.
      Nurse Jill

      Reply
  7. Linda Anderson Avatar
    Linda Anderson
    January 24, 2026

    Excellent content!

    Reply
  8. Elizabeth Avatar
    Elizabeth
    January 24, 2026

    Jill, I have been following you for years! (2020)
    I always appreciate the informative information you send us, however, this explanation of how the kidneys work, is truly the best and well-written article I have EVER read.
    Thank you for all the info you send us!
    You are amazing at what you do!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Elizabeth,
      I cannot express how your kind words warmed my heart. Thank you for taking the time to express them.
      Love,
      Jill

      Reply
  9. Leanne Northrup Griffin Avatar
    Leanne Northrup Griffin
    January 24, 2026

    This is terrific Jill! Thank you.

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Leanne,
      I love you.
      You are welcome!
      j

      Reply
  10. Van Nguyen Avatar
    Van Nguyen
    January 24, 2026

    Hi Jill,
    I’m really want to thank God, Budda (my religion God) for me to find you in YouTube, even though it’s late as I’ve already had kidney stones. But it’s late rather than not knowing you, right. I’ll have a call with you on Monday, 1/26/26 and I’m very excited to talk to you. I’ve been viewing your video with Jeff every day, several times a day to educate myself. Thanks for making those videos available to the viewers. It’s very cold in my area, Maryland.
    Talk to you soon.
    Van Nguyen

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Van,
      What a pleasure it was helping you during our call. Glad you are enjoying the YouTube videos!!
      Jill

      Reply
  11. Lisa Avatar
    Lisa
    January 24, 2026

    Hi Jill- this may be your most impactful article yet & you’ve written so many useful pieces.
    I loved the dishwasher comparison to kidneys & your overall easy-to-understand description really helped me visualize my kidney function.
    It was all so informative & wonderfully descriptive …& with memorable imagery !

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Lisa,
      I wanted to find an analogy that we all could understand. The kidneys are very complicated organs and talking about them can cause patients eyes to become hazy. Keeping anatomy and function compared to everyday things is in my opinion the best way to get people to stay interested. Glad this resonated with you!
      j

      Reply
  12. Lisa McNulty Avatar
    Lisa McNulty
    January 24, 2026

    What an incredibly helpful explanation! The dishwasher analogy makes it all so much easier to understand!
    Thank you!!!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Lisa,
      So happy it helped!
      j

      Reply
  13. Penny Paton Avatar
    Penny Paton
    January 24, 2026

    Thanks Jill. I knew we had to drink a lot (something I struggle with at times but I know if I been very bad as my lower stomach area starts to ache). Now having the image of a dishwasher brings it all home more and I think I understand the salt and calcium better. Salt makes my figures tingle so I always stick to the allowance or less. I am also getting some calcium better as you recently said it was alright to have with my cornflakes, I now have fortified coconut milk so I can get some calcium (can’t have dairy). Been ok for 6 years now – it’s was Yam and Buckwheat that caused my stones as I was eating them very heavily. Penny

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Penny,
      It is so common that people overate the highest oxalate foods every day without getting calcium needs met. Your story is one I hear daily. Glad the article helped!
      Nurse Jill

      Reply
  14. William Brodows Avatar
    William Brodows
    January 24, 2026

    Jill–Thx so much for this overview. I can really understand how my diet is impacting my situation. How does the sugar in fruit, as opposed to refined sugar, fit into these processes. Thx much!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi William,
      You can certainly enjoy fruit. I like fruit that also has a good amount of fiber like all the berries. Refined sugar, those foods that contain it, like cookies, cakes, and candies can lower urine volume and raise urine calcium. Natural sugar like that in fruit? Very different story. Yes, fruit contains sugar—but it comes packaged with fiber, potassium, magnesium, water, and natural citrate. That slows absorption, blunts insulin spikes, and actually helps protect calcium in the body. Potassium from fruit reduces calcium loss in urine, and citrate helps keep calcium from crystallizing. Net effect: little to no increase in urine calcium when fruit is eaten in normal portions. Meaning don’t eat 10 apples per day. Hope that helps.
      Nurse Jill

      Reply
  15. Su Yoder Avatar
    Su Yoder
    January 24, 2026

    Thank you Jill I love these posts you put up. I feel like I am getting a pep talk to keep on going and it encourages me to stick with the program when I really want to eat that big piece of Chocolate brioche for example. Have a wonderful day

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Su,
      MMMMMM! Chocolate cake. You can certainly have a piece here and there. Have it with a calcium source and move on.
      Love,
      Jill

      Reply
  16. Judy Rudder Avatar
    Judy Rudder
    January 24, 2026

    Thank you so Jill much for this informative article.. I have been following you since 2021 when I went to ER after an episode of severe pain, which only lasted 15 minutes as when I rolled to my side in pain, apparently the stone went back into the kidney. I still went to ER to get checked out and a scan showed a large 12mm stone which I had surgery to insert stent and laser and remove and then 3 months later another 5mm stone removed in the same way. All in all 6 anaesthetics in 4 months. I didn’t want to repeat that , so in desperation and researching, I found Dr Cole and you!
    Following your advice I began lowering my salt, increasing my calcium and drinking 2 + litres of water + fluids each day. At my next 6 monthly scan I had a 2mm and 3mm kidney stone visible in my left kidney. My last 2 yearly scans show those stones to be the unchanged, so I am confident that what I am doing is working.
    All thanks to you Jill. I can highly recommend your advice.

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Dear Judy,
      You have no idea how happy your update made me. Thank you for taking the time to send me your note. Keep going, sister. You GOT THIS!
      Love,
      Jill

      Reply
  17. Edward Rodriguez Avatar
    Edward Rodriguez
    January 24, 2026

    Jill,

    I read your article religiously and find them very insightful. I found this one about how our kidneys work to be put forth in a simple, straight forward explanation that is easy to understand. It made a lot of sense. Thank you for all the help you provide to us. You are appreciated more than you know.

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Edward,
      Thank you for always supporting my work. You have no idea how much I value you.
      j

      Reply
  18. Josh Avatar
    Josh
    January 25, 2026

    Great info and perspective Jill. Thank you

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Josh,
      I value your kindness!
      Thank you!!!
      Nurse Jill

      Reply
  19. Rebecca Kremer Avatar
    Rebecca Kremer
    January 25, 2026

    Since I will be 79 in a few weeks, I am very aware that my dishwasher is aging and the warranty from the factory has long ago expired. However, It is still doing a good job keeping my dishes clean as long as I keep using the detergent that you recommend. As usual, you make us remember to keep at it and always do it in a way that doesn’t preach to us, but actually educates us in the most fascinating and entertaining ways. This truly is your calling and we are lucky to have you! Thank you for always caring for your flock. Love, Becky Kremer of the Kidney Stone Survivors Club

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Rebecca,
      Thank you for your thoughtful comment. I try my best to make it enjoyable. The kidney is a rather “dry” topic and extremely complicated.
      Love,
      Nurse Jill

      Reply
  20. Reid Ringer Avatar
    Reid Ringer
    January 25, 2026

    Jill I am a Pharmacist who just suffered from
    My first stone and found your info absolutely spot on!

    Thanks for providing a service that is much needed to stone patients as few doctors paint the entire picture of the physiology of stone formation and treatment. Heck, I bet many dont even know it to this depth for that matter.

    What a wonderful presentation to educate these patients expressed in terms they can relate and incorporate in their daily lives. Well done!!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Reid,
      How kind of you to take time from you life to comment on this. Thank you so much for your feedback,
      Nurse Jill

      Reply
  21. Mary Giallo Avatar
    Mary Giallo
    January 25, 2026

    this is an excellent example of how things work!…easy to understand, relatable, and visually astute. thanks for sharing!

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Mary,
      My pleasure!
      Nurse Jill

      Reply
  22. Chris Avatar
    Chris
    January 26, 2026

    Very helpful, Jill. Thank you so much for sharing your interest and expertise in the physiology of kidney stone formation. Having struggled with (non-familial) kidney stones for nearly 40 years and I’m still struggling with both (occasional) acute stoney episodes and chronic unilateral kidney pain. I’ve adopted many of the dietary changes you address here (increased water intake, dietary calcium, reduced salt, no red meat protein, no nut protein, no dark leafy veggies, etc.) but have been unable to shed the chronic left side kidney pain. Any ideas or recommendations are very welcome.

    Reply
    1. Jill Harris, LPN, CHC Avatar
      Jill Harris, LPN, CHC
      February 3, 2026

      Hi Chris.
      You didn’t say if you had current stones in the left side? Also, relook at the goals. The meat protein goal is for all meat, anything that runs, swims, or flys, not just red meat. You can still have some dark leafy greens except spinach and rhubarb. Just don’t want you limiting yourself too much. LMK if you have current stones on that side and have you talked to your doc about this “chronic left side pain.”
      Nurse Jill

      Reply
  23. Elfrieda O’Neill Avatar
    Elfrieda O’Neill
    February 6, 2026

    Yes! This article is REALLY helpful to me. Thank you! I have been pretty diligent about eliminating oxalates in my diet, and adding calcium sources, but I have to admit, I was dragging my feet on cutting down on the sugar and sodium. So, now I know what I have to do – no excuses! I had my stones removed through a laparascopic (sp?) procedure, and I was doing fine, post procedure, until I removed the stent. After that, for 2 or 3 days, I had waves of the worst pain I have ever had, (that lessened as the days went on) and couldn’t figure out why – was that pain more stones passing? And no-one prepared me for the length of the stent, which I had to remove myself – that was really scary! Thanks so much for all of your great information.

    Reply

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